Michael,
Thanks for the response.
I may have imported the bins from Prelude into Premiere twice. Once at an intermediate stage, and once upon completion of the logging and subclipping. I might have then deleted the intermediate bin in Premiere. I undid everything in Premiere via the History menu but it didn't change anything in Prelude.
As stated above:
-OS X 10.9.5
-Premiere Pro 2014.2 Release. (I also updated this as well as Prelude)
-MOV files. (Pro Res 422 (HQ) from a Ninja)
I will try the test project. How do I email you the project file?