The programs are the same, but the handling is different. For InDesign I would strongly recommend to use a Mac, as when typing correct glyphs it is easier to use the alt key. A mac keyboard has 4 layouts contrary to windows, where you get these extended glyphs only via holding down the alt key by typing 4 numbers in the numeric part of the keyboard.
With PS and IL I see equality, with Acrobat I prefer to work on windows.